Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs35777021 chr19:37910991 C/T 1.37E-13 134 45.47 37.53 17.1 KM Plot
TGCT rs35789143 chr7:128727730 G/A 2.02E-5 132 42.18 37.1 17.1 KM Plot
TGCT rs35796318 chr4:47425923 A/G 0.000163 130 46.3 34.23 51.6 KM Plot
TGCT rs35880599 chr2:3480855 A/T 2.43E-5 131 40.57 75.38 25.32 KM Plot
TGCT rs35931272 chr10:27557719 A/G 6.98E-7 132 42.18 46.3 20.6 KM Plot
TGCT rs36072475 chr6:42594068 T/TA 2.13E-7 132 38.2 45.1 23.82 KM Plot
TGCT rs36073657 chr7:128651522 C/T 1.69E-5 134 42.27 30.3 17.1 KM Plot
TGCT rs369538927 chr7:127210009 AATGG/A 6.53E-13 127 42.03 30.88 17.1 KM Plot
TGCT rs371374 chr17:39381828 A/C 7.83E-7 132 13.17 56.7 42.27 KM Plot
TGCT rs371517139 chr6:62817828 C/T 7.8E-7 133 42.18 38.2 23.43 KM Plot
TGCT rs371823452 chr17:39384032 G/GA 1.16E-6 129 13.17 56.7 42.18 KM Plot
TGCT rs373255459 chr3:125630907 CTTATT/C 2.17E-5 132 51.32 35.37 52.43 KM Plot
TGCT rs3736745 chr6:42630107 A/G 2.46E-8 134 37.62 51.67 20.6 KM Plot
TGCT rs3741615 chr12:129298848 G/A 1.39E-5 134 41.33 44.28 29.53 KM Plot
TGCT rs374433840 chr10:27593768 T/C 0 127 42.18 45.83 18.85 KM Plot